Publications of the Max-Planck-Zentrum für Physik und Medizin


2024  | 2023  |  2022  |  2021  |  2020  |  2019  |  2018  |  2017


2024

Optical characterization of molecular interaction strength in protein condensates

Timon Beck, Lize-Mari van der Linden, Wade M. Borcherds, Kyoohyun Kim, Raimund Schlüßler, Paul Müller, Titus M. Franzmann, Conrad Möckel, Ruchi Goswami, et al.

Molecular Biology of the Cell 35(12) (2024) | Journal | PDF


Consensus Statement on Brillouin Light Scattering Microscopy of Biological Materials

Pierre Bouvet, Carlo Bevilacqua, Yogeshwari Ambekar, Giuseppe Antonacci, Joshua Au, Silvia Caponi, Sophie Chagnon-Lessard, Juergen Czarske, Thomas Dehoux, et al.

arXiv 2411.11712 (2024) Preprint | PDF


Tailored Bisacylphosphane Oxides for Precise Induction of Oxidative Stress-Mediated Cell Death in Biological Systems

Karim Almahayni, Jana Bachir Salvador, Riccardo Conti, Anna Widera, Malte Spiekermann, Daniel Wehner, Hansjörg Grützmacher, Leonhard Möckl

ACS Chemical Biology (2024) | Journal | PDF


S96 Circulating neutrophils in idiopathic pulmonary fibrosis have a distinct biomechanical phenotype of systemic activation that correlates with disease severity

Katherina Lodge, Sara Nakanashi, Leda Yazbeck, Jochen Guck, Philip L. Molyneaux , Andrew S. Cowburn

BMJ Thorax 79 A70-A71 (2024) | Journal


Thermally Assisted Microfluidics to Produce Chemically Equivalent Microgels with Tunable Network Morphologies

Dirk Rommel, Bernhard Häßel, Philip Pietryszek, Matthias Mork, Oliver Jung, Meike Emondts, Nikita Norkin, Iris Christine Doolaar, Yonka Kittel, et al.

Angewandte Chemie, International Edition in English (2024) | Journal | PDF


Microglia are essential for tissue contraction in wound closure after brain injury in zebrafish larvae

Francois El-Daher, Stephen J. Enos, Louisa K. Drake, Daniel Wehner, Markus Westphal, Nicola J. Porter, Catherine G. Becker, Thomas Becker

Life science alliance 8(1) e202403052 (2024) | Journal | PDF


Longitudinal associations between depressive symptoms and cell deformability: do glucocorticoids play a role?

Julian Eder, Martin Kräter, Clemens Kirschbaum, Wei Gao, Magdalena Wekenborg, Marlene Penz, Nicole Rothe, Jochen Guck, Lucas Daniel Wittwer, et al.

European Archives of Psychiatry and Clinical Neuroscience (2024) | Journal | PDF


Omega-3 supplementation changes the physical properties of leukocytes but not erythrocytes in healthy individuals: An exploratory trial

Jan Philipp Schuchardt, Martin Kräter, Maximilian Schlögel, Jochen Guck, Brigitte A. van Oirschot-Hermans, Jennifer Bos, Richard van Wijk, Nathan L. Tintle, Jason Westra, et al.

Prostaglandins Leukotrienes and Essential Fatty Acids 202 102636 (2024) | Journal | PDF


Holotomography

Geon Kim, Herve Hugonnet, Kyoohyun Kim, Chungha Lee, Jae-Hyuk Lee, Seongsoo Lee, Sung Sik Lee, Gabor Csucs, Jeongmin Ha, et al.

Nature Reviews Methods primers 4 51 (2024) | Journal


iSCAT microscopy and particle tracking with tailored spatial coherence

Mahdi Mazaheri, Kiarash Kasaian, David Albrecht, Jan Renger, Tobias Utikal, Cornelia Holler, Vahid Sandoghdar

Optica 11 1030-1038 (2024) | Journal | PDF


High-Resolution Cryogenic Spectroscopy of Single Molecules in Nanoprinted Crystals

Mohammad Musavinezhad, Jan Renger, Johannes Zirkelbach , Tobias Utikal, Claudio U. Hail, Thomas Basché, Dimos Poulikakos, Stephan Götzinger, Vahid Sandoghdar

ACS Nano (2024) | Journal | PDF


Measuring Concentration of Nanoparticles in Polydisperse Mixtures Using Interferometric Nanoparticle Tracking Analysis

Anna D. Kashkanova, David Albrecht, Michelle Küppers, Martin Blessing, Vahid Sandoghdar

ACS Nano (2024) | Journal | PDF


Mutation of the ALS-/FTD-Associated RNA-Binding Protein FUS Affects Axonal Development

Francesca W. van Tartwijk, Lucia C. S. Wunderlich, Ioanna Mela, Stanislaw Makarchuk, Maximilian A. H. Jakobs, Seema Qamar, Kristian Franze, Gabriele S. Kaminski Schierle, Peter H. St George-Hyslop, et al.

The Journal of Neuroscience: The Official Journal of the Society for Neuroscience 44(27) (2024) | Journal


Beyond comparison: Brillouin microscopy and AFM-based indentation reveal divergent insights into the mechanical profile of the murine retina

Marcus Gutmann, Jana Bachir Salvador, Paul Müller, Kyoohyun Kim, Martin Schicht, Serhii Aif, Friedrich Paulsen, Lorenz Meinel, Jochen Guck, et al.

Journal of Physics: Photonics 6 035020 (2024) | Journal | PDF


Nonlinear dynamics of femtosecond laser interaction with the central nervous system in zebrafish

Soyeon Jun, Andreas Herbst, Kilian Scheffter, Nora John, Julia Kolb, Daniel Wehner, Hanieh Fattahi

Communications Physics (7) 161 (2024) | Journal | PDF


Estimation of the mass density of biological matter from refractive index measurements

Conrad Möckel, Timon Beck, Sara Kaliman, Shada Abuhattum Hofemeier, Kyoohyun Kim, Julia Kolb, Daniel Wehner, Vasily Zaburdaev, Jochen Guck

Biophysical Reports 4(2) 100156 (2024) | Journal | PDF


Membrane to cortex attachment determines different mechanical phenotypes in LGR5+ and LGR5- colorectal cancer cells

Sefora Conti, Valeria Venturini, Adrià Cañellas-Socias, Carmen Cortina, Juan F. Abenza, Camille Stephan-Otto Attolini, Emily Middendorp Guerra, Catherine Xu, Jia Hui Li, et al.

Nature Communications 15 3363 (2024) | Journal | PDF


High-throughput viscoelastic characterization of cells in hyperbolic microchannels

Felix Reichel, Ruchi Goswami, Salvatore Girardo, Jochen Guck

Lab on a Chip 24 2440-2453 (2024) | Journal | PDF


An optofluidic antenna for enhancing the sensitivity of single-emitter measurements

Luis Morales-Inostroza, Julian Folz, Ralf Kühnemuth, Suren Felekyan, Franz Wieser, Claus A.M. Seidel, Stephan Götzinger, Vahid Sandoghdar

Nature Communications 15 2545 (2024) | Journal | PDF


A deep‐learning workflow to predict upper tract urothelial carcinoma protein‐based subtypes fromH&Eslides supporting the prioritization of patients for molecular testing

Miriam Angeloni, Thomas van Doeveren, Sebastian Lindner, Patrick Volland, Jorina Schmelmer, Sebastian Foersch, Christian Matek, Robert Stoehr, Carol I Geppert, et al.

The Journal of Pathology: Clinical Research 10 (2024) | Journal | PDF


Exploring the Physics of Basic Medical Research

Vahid Sandoghdar

Physical Review Letters 132 090001 (2024) | Journal | PDF


invited essay

Single-Cell Mechanics: Structural Determinants and Functional Relevance

Marta Urbanska, Jochen Guck

Annual Review of Biophysics 53 (2024) | Journal | PDF


A paintbrush for delivery of nanoparticles and molecules to live cells with precise spatiotemporal control

Cornelia Holler, Richard W. Taylor, Alexandra Schambony, Leonhard Möckl, Vahid Sandoghdar

Nature Methods 21 512-520 (2024) | Journal | PDF


Mean zero artificial diffusion for stable finite element approximation of convection in cellular aggregate formation

Soheil Firooz, B. Daya Reddy, Vasily Zaburdaev, Paul Steinmann

Computer Methods in Applied Mechanics and Engineering 419 116649 (2024) | Journal | PDF


Brillouin microscopy

Irina Kabakova, Jitao Zhang, Yuchen Xiang, Silvia Caponi, Alberto Bilenca, Jochen Guck, Guiliano Scarcelli

Nature Reviews Methods primers 4 8 (2024) | Journal


p21 Prevents the Exhaustion of CD4+ T Cells Within the Antitumor Immune Response Against Colorectal Cancer

Oana-Maria Thoma, Elisabeth Naschberger, Markéta Kubánková, Imen Larafa, Viktoria Kramer, Bianca Menchicchi, Susanne Merkel, Nathalie Britzen-Laurent, André Jefremow, et al.

Gastroenterology 166(2) 284-297 (2024) | Journal | PDF


A universal strategy to induce oxidative stress-mediated cell death in biological systems

Leonhard Möckl, Karim Almahayni, Jana Bachir Salvador, Riccardo Conti, Anna Widera, Malte Spiekermann, Daniel Wehner, Hansjörg Grützmacher

Research Square 10.21203/rs.3.rs-3753893/v1 (2024) Preprint | PDF


Where bacteria and eukaryotes meet

Liraz Chai, Elizabeth A. Shank, Vasily Zaburdaev, Mohamed Y. El-Naggar

Journal of Bacteriology 206 (2024) | Journal


AI-driven projection tomography with multicore fibre-optic cell rotation

Jiawei Sun, Bin Yang, Nektarios Koukourakis, Jochen Guck, Juergen W. Czarske

Nature Communications 15 147 (2024) | Journal | PDF


Long-range three-dimensional tracking of nanoparticles using interferometric scattering (iSCAT) microscopy

Kiarash Kasaian, Mahdi Mazaheri, Vahid Sandoghdar

arXiv 2401.12939v1 (2024) Preprint | PDF


Tensed axons are on fire

Kristian Franze

Proceedings of the National Academy of Sciences of the United States of America 121(5) (2024) | Journal | PDF



2023

Residual cells and nutrient availability guide wound healing in bacterial biofilms

Yusong Ye, Mnar Ghrayeb, Sarah Miercke, Sania Arif, Susann Müller, Thorsten Mascher, Liraz Chai, Vasily Zaburdaev

Soft Matter 20 1047-1060 (2023) | Journal | PDF


Spectral splitting of a stimulated Raman transition in a single molecule

Johannes Zirkelbach, Burak Gürlek, Masoud Mirzaei, Alexey Shkarin, Tobias Utikal, Stephan Götzinger, Vahid Sandoghdar

Physical Review Research 5 043244 (2023) | Journal | PDF


On-chip interference of scattering from two individual molecules

Dominik Rattenbacher, Alexey Shkarin, Jan Renger, Tobias Utikal, Stephan Götzinger, Vahid Sandoghdar

Optica 10 1595-1601 (2023) | Journal | PDF


Insights into protein structure using cryogenic light microscopy

Hisham Mazal, Franz Wieser, Vahid Sandoghdar

Biochemical Society Transactions (2023) | Journal | PDF


Mechanics in the nervous system: From development to disease

Eva K. Pillai, Kristian Franze

Neuron 112(3) 342-361 (2023) | Journal | PDF


Regenerative capacity of neural tissue scales with changes in tissue mechanics post injury

Alejandro Carnicer-Lombarte, Damiano G. Barone, Filip Wronowski, George G. Malliaras, James W. Fawcett, Kristian Franze

Biomaterials 303 (2023) | Journal | PDF


Bile Is a Selective Elevator for Mucosal Mechanics and Transport

Simon Hanio, Stephanie Möllmert, Conrad Möckel, Susobhan Choudhury, Andreas I. Höpfel, Theresa Zorn, Sebastian Endres, Jonas Schlauersbach, Lena Scheller, et al.

Molecular Pharmaceutics 20 6151-6161 (2023) | Journal


Small leucine-rich proteoglycans inhibit CNS regeneration by modifying the structural and mechanical properties of the lesion environment

Julia Kolb, Vasiliki Tsata, Nora John, Kyoohyun Kim, Conrad Möckel, Gonzalo Rosso, Veronika Kurbel, Asha Parmar, Gargi Sharma, et al.

Nature Communications 14 6814 (2023) | Journal | PDF


Varying the Stiffness and Diffusivity of Rod-Shaped Microgels Independently through Their Molecular Building Blocks

Yonca Kittel, Luis P. B. Guerzoni, Carolina Itzin, Dirk Rommel, Matthias Mork, Céline Bastard, Bernhard Häßel, Abdolrahman Omidinia-Anarkoli, Silvia P. Centeno, et al.

Angewandte Chemie, International Edition in English 62 e202309779 (2023) | Journal | PDF


Conserved nucleocytoplasmic density homeostasis drives cellular organization across eukaryotes

Abin Biswas, Omar Muñoz, Kyoohyun Kim, Carsten Hoege, Benjamin M. Lorton, David Shechter, Jochen Guck, Vasily Zaburdaev, Simone Reber

bioRxiv 2023.09.05.556409 (2023) Preprint | PDF


Periodic ethanol supply as a path toward unlimited lifespan of Caenorhabditis elegans dauer larvae

Xingyu Zhang, Sider Penkov, Teymuras V. Kurzchalia, Vasily Zaburdaev

Frontiers in Aging 4 (2023) | Journal | PDF


Label-free composition determination for biomolecular condensates with an arbitrarily large number of components

Patrick McCall, Kyoohyun Kim, Martine Ruer-Gruß, Jan Peychl, Jochen Guck, Anthony A. Hyman, Jan Brugués

bioRxiv 2020.10.25.352823 (2023) Preprint | PDF


Human T cells loaded with superparamagnetic iron oxide nanoparticles retain antigen-specific TCR functionality

Felix Pfister, Jan Dörrie, Niels Schaft, Vera Buchele, Harald Unterweger, Lucas R. Carnell, Patrick Schreier, Rene Stein, Markéta Kubánková, et al.

Frontiers in Immunology 14 1223695 (2023) | Journal | PDF


Amphiphiles Formed from Synthetic DNA-Nanomotifs Mimic the Stepwise Dispersal of Transcriptional Clusters in the Cell Nucleus

Xenia Tschurikow, Aaron Gadzekpo, Mai P. Tran, Rakesh Chatterjee, Marcel Sobucki, Vasily Zaburdaev, Kerstin Göpfrich, Lennart Hilbert

Nano Letters 23 7815-7824 (2023) | Journal


Highly Nonlinear Dynamics of In Vivo Deep-Tissue Interaction with Femtosecond Laser Pulses at 1030 nm

Soyeon Jun, Andreas Herbst, Kilian Scheffter, Nora John, Julia Kolb, Daniel Wehner, Hanieh Fattahi

arXiv 2308.05453 (2023) Preprint | PDF


Brain tissue mechanics is governed by microscale relations of the tissue constituents

P. Sáez, C. Borau, N. Antonovaite, Kristian Franze

Biomaterials 301 (2023) | Journal | PDF


IL-3 receptor signalling suppresses chronic intestinal inflammation by controlling mechanobiology and tissue egress of regulatory T cells

Karen Anne-Marie Ullrich, Julia Derdau, Carsten Baltes, Alice Battistella, Gonzalo Rosso, Stefan Uderhardt, Lisa Lou Schulze, Li-Juan Liu, Mark Dedden, et al.

Gut 72 2081-2094 (2023) | Journal | PDF


Label-free discrimination of extracellular vesicles from large lipoproteins

Anna D. Kashkanova, Martin Blessing, Marie Reischke, Jan-Ole Baur, Andreas S. Baur, Vahid Sandoghdar, Jan Van Deun

Journal of extracellular vesicles 12 12348 (2023) | Journal | PDF


Revolutionizing microfluidics with artificial intelligence: a new dawn for lab-on-a-chip technologies

Keisuke Goda, Hang Lu, Peng Fei, Jochen Guck

Lab Chip 23(17) 3737-3740 (2023) | Journal


De novo identification of universal cell mechanics gene signatures

Marta Urbanska, Yan Ge, Maria Winzi, Shada Abuhattum Hofemeier, Syed Shafat Ali, Maik Herbig, Martin Kräter, Nicole Toepfner, Joanna Durgan, et al.

eLife 12 RP87930 (2023) | PDF


Plakoglobin is a mechanoresponsive regulator of naive pluripotency

Timo N. Kohler, Joachim De Jonghe, Anna L. Ellermann, Ayaka Yanagida, Michael Herger, Erin M. Slatery, Antonia Weberling, Clara Munger, Katrin Fischer, et al.

Nature Communications 14(1) (2023) | Journal | PDF


Constriction imposed by basement membrane regulates developmental cell migration

Ester Molina López, Anna Kabanova, Alexander Winkel, Kristian Franze, Isabel M. Palacios, María D. Martín-Bermudo

PLoS biology 21(6) (2023) | Journal | PDF


Alcohol-sourced acetate impairs T cell function by promoting cortactin acetylation

Vugar Azizov, Michael Hübner, Michael Frech, Jörg Hofmann, Markéta Kubánková, Dennis Lapuente, Matthias Tenbusch, Jochen Guck, Georg Schett, et al.

iScience 26(7) 107230 (2023) | Journal | PDF


Organic Molecules as Origin of Visible-Range Single Photon Emission from Hexagonal Boron Nitride and Mica

Michael Neumann, Xu Wei, Luis Morales-Inostroza, Seunghyun Song, Sung-Gyu Lee, Kenji Watanabe, Takashi Taniguchi, Stephan Götzinger, Young Hee Lee

ACS Nano 17 11679-11691 (2023) | Journal


Quantum Efficiency of Single Dibenzoterrylene Molecules in p-Dichlorobenzene at Cryogenic Temperatures

Mohammad Musavinezhad, Alexey Shkarin, Dominik Rattenbacher, Jan Renger, Tobias Utikal, Stephan Götzinger, Vahid Sandoghdar

The Journal of Physical Chemistry B 5353-5359 (2023) | Journal | PDF


Identification of a Distinct Monocyte-Driven Signature in Systemic Sclerosis Using Biophysical Phenotyping of Circulating Immune Cells

Alexandru-Emil Matei, Markéta Kubánková, Liyan Xu, Andrea-Hermina Györfi, Evgenia Boxberger, Despina Soteriou, Maria Papava, Julia Prater, Xuezhi Hong, et al.

Arthritis & Rheumatology 75(5) 768-781 (2023) | Journal | PDF


Dynamics of cell rounding during detachment

Agata Nyga, Katarzyna Plak, Martin Kräter, Marta Urbanska, Kyoohyun Kim, Jochen Guck, Buzz Baum

iScience 26(5) 106696 (2023) | Journal | PDF


Confocal Interferometric Scattering Microscopy Reveals 3D Nanoscopic Structure and Dynamics in Live Cells

Michelle Küppers, David Albrecht, Anna D. Kashkanova, Jennifer Lühr, Vahid Sandoghdar

Nature Communications 14 1962 (2023) (2023) | Journal | PDF


Rapid single-cell physical phenotyping of mechanically dissociated tissue biopsies

Despina Soteriou, Markéta Kubánková, Christine Schweitzer, Rocío López-Posadas, Rahmita Pradhan, Oana-Maria Thoma, Andrea-Hermina Györfi, Alexandru-Emil Matei, Maximilian Waldner, et al.

Nature Biomedical Engineering 7 1392-1403 (2023) | Journal | PDF


Impact of crowding on the diversity of expanding populations

Carl F. Schreck, Diana Fusco, Yuya Karita, Stephen Martis, Jona Kayser, Marie-Cécilia Duvernoy, Oskar Hallatschek

Proceedings of the National Academy of Sciences of the United States of America 120(11) e2208361120 (2023) | Journal | PDF


Self-supervised machine learning pushes the sensitivity limit in label-free detection of single proteins below 10 kDa

Mahyar Dahmardeh, Houman Mirzaalian Dastjerdi, Hisham Mazal, Harald Köstler, Vahid Sandoghdar

Nature Methods 20 442-447 (2023) | Journal | PDF


A new hyperelastic lookup table for RT-DC

Lukas Daniel Wittwer, Felix Reichel, Paul Mueller, Jochen Guck, Sebastian Aland

Soft Matter 19(11) 2064-2073 (2023) | Journal | PDF


Shear rheology of methyl cellulose based solutions for cell mechanical measurements at high shear rates

Beyza Büyükurganci, Santanu Kumar Basu, Markus Neuner, Jochen Guck, Andreas Wierschem, Felix Reichel

Soft Matter 19 1739-1748 (2023) | Journal | PDF


Embracing the diversity of model systems to deconstruct the basis of regeneration and tissue repair

Aldine Amiel, Stephanie Tsai, Daniel Wehner

Development 150(3) dev.201579 (2023) | Journal


Image-based cell sorting using focused travelling surface acoustic waves

Ahmad Ahsan Nawaz, Despina Soteriou, Catherine Xu, Ruchi Goswami, Maik Herbig, Jochen Guck, Salvatore Girardo

Lab on a Chip 23 372-387 (2023) | Journal | PDF


Epithelial RAC1-dependent cytoskeleton dynamics controls cell mechanics, cell shedding and barrier integrity in intestinal inflammation

Luz del Carmen Martínez-Sánchez, Phuong Anh Ngo, Rashmita Pradhan, Lukas-Sebastian Becker, David Boehringer, Despina Soteriou, Markéta Kubánková, Christine Schweitzer, Tatyana Koch, et al.

Gut 72(2) 275-294 (2023) | Journal | PDF



2022

Evolutionary rescue of resistant mutants is governed by a balance between radial expansion and selection in compact populations

Serhii Aif, Nico Appold, Lucas Kampman, Oskar Hallatschek, Jona Kayser

Nature Communications 13 7916 (2022) | Journal | PDF


Caveolin-1 dolines form a distinct and rapid caveolae-independent mechanoadaptation system

Fidel-Nicolás Lolo, Nikhil Walani, Eric Seemann, Dobryna Zalvidea, Dácil María Pavón, Gheorghe Cojoc, Moreno Zamai, Christine Varis de Lesegno, Fernando Martínez de Benito, et al.

Nature Cell Biology 25 120-133 (2022) | Journal | PDF


Mechanical behavior of the hippocampus and corpus callosum: An attempt to reconcile ex vivo with in vivo and micro with macro properties

Gergerly Bertalan, Julia Becker, Heiko Tzschätzsch, Anna Morr, Helge Herthum, Mehrgan Shahryari, Ryan D. Greenhalgh, Jing Guo, Leif Schröder, et al.

Journal of the Mechanical Behavior of Biomedical Materials 138 (2022) | Journal | PDF


Retinal regions shape human and murine Müller cell proteome profile and functionality

Lew Kaplan, Corinne Drexler, Anna M. Pfaller, Santra Brenna, Kirsten A. Wunderlich, Andrea Dimitracopoulos, Juliane Merl-Pham, Maria-Theresa Perez, Ursula Schlötzer-Schrehardt, et al.

Glia 71(2) 391-414 (2022) | Journal | PDF


Ultralong Imaging Range Chromatic Confocal Microscopy

Gargi Sharma, Kanwarpal Singh

Advanced Photonics Research 2200116 (2022) | Journal | PDF


Unrestrained growth of correctly oriented microtubules instructs axonal microtubule orientation

Maximilian A. H. Jakobs, Assaf Zemel, Kristian Franze

eLife 11 (2022) | Journal | PDF


Immune Cell Deformability in Depressive Disorders: Longitudinal Associations Between Depression, Glucocorticoids and Cell Deformabilit

Andreas Walter, Martin Kräter, Clemens Kirschbaum, Wei Gao, Magdalena Wekenborg, Marlene Penz, Nicole Rothe, Jochen Guck, Lukas Daniel Wittwer, et al.

medRxiv 2022.09.23.22280275 (2022) | PDF


Viscoelastic properties of suspended cells measured with shear flow deformation cytometry

Richard Gerum, Elham Mirzahossein, Mar Eroles, Jennifer Elsterer, Astrid Mainka, Andreas Bauer, Selina Sonntag, Alexander Winterl, Johannes Bartl, et al.

eLife 11 e78823 (2022) | Journal | PDF


A DNA Segregation Module for Synthetic Cells

Mai P. Tran, Rakesh Chatterjee, Yannik Dreher, Julius Fichtler, Kevin Jahnke, Lennart Hilbert, Vasily Zaburdaev, Kerstin Göpfrich

Small 19 (2022) | Journal | PDF


Robust Tipless Positioning Device for Near-Field Investigations: Press and Roll Scan (PROscan)

Hsuan-Wei Liu, Michael A. Becker, Korenobu Matsuzaki, Randhir Kumar, Stephan Götzinger, Vahid Sandoghdar

ACS Nano 16 12831-12839 (2022) | Journal | PDF


On continuum modeling of cell aggregation phenomena

Soheil Firooz, Stefan Kaessmair, Vasily Zaburdaev, Ali Javili, Paul Steinmann

Journal of the Mechanics and Physics of Solids 167 105004 (2022) | Journal


PNIPAAm microgels with defined network architecture as temperature sensors in optical stretchers

Nicolas Hauck, Timon Beck, Gheorghe Cojoc, Raimund Schlüßler, Saeed Ahmed, Ivan Raguzin, Martin Mayer, Jonas Schubert, Paul Müller, et al.

Materials Advances 3 6179-6190 (2022) | Journal | PDF


Quantitative phase imaging through an ultra-thin lensless fiber endoscope

Jiawei Sun, Jiachen Wu, Ruchi Goswami, Salvatore Girardo, Liangcai Cao, Jochen Guck, Nektarios Koukourakis, Jürgen W. Czarske

Light: Science & Applications 11 204 (2022) | Journal | PDF


Long COVID: Association of Functional Autoantibodies against G-Protein-Coupled Receptors with an Impaired Retinal Microcirculation

Charlotte Szewczykowski, Christian Mardin, Marianna Lucio, Gerd Wallukat, Jakob Hoffmanns, Thora Schröder, Franziska Raith, Lennart Rogge, Felix Heltmann, et al.

International Journal of Molecular Sciences 23(13) 7209 (2022) | Journal | PDF


In vivo assessment of mechanical properties during axolotl development and regeneration using confocal Brillouin microscopy

Camilo Riquelme-Guzmán, Timon Beck, Sandra Edwards-Jorquera, Raimund Schlüßler, Paul Müller, Jochen Guck, Stephanie Möllmert, Tatiana Sandoval-Guzmán

Open Biology 12(6) 220078 (2022) | Journal | PDF


Amoeboid-like migration ensures correct horizontal cell layer formation in the developing vertebrate retina

Rana Amini, Archit Bhatnagar, Raimund Schlüßler, Stephanie Möllmert, Jochen Guck, Caren Norden

eLife 11 e76408 (2022) | Journal | PDF


Adipose cells and tissues soften with lipid accumulation while in diabetes adipose tissue stiffens

Shada Abuhattum, Petra Kotzbeck, Raimund Schlüßler, Alexandra Harger, Angela Ariza de Schellenberger, Kyoohyun Kim, Joan-Carles Escolano, Torsten Müller, Jürgen Braun, et al.

Scientific Reports 12 10325 (2022) | Journal | PDF


Deciphering a hexameric protein complex with Angstrom optical resolution

Hisham Mazal, Franz Wieser, Vahid Sandoghdar

eLife 11 e76308 (2022) | Journal | PDF


Wie mikrobielle Modellsysteme helfen, Tumorevolution zu entschlüsseln

Maximilian Eiche, Jona Kayser

Biospektrum 28(3) 250-252 (2022) | Journal | PDF


A Pili-Driven Bacterial Turbine

Wolfram Pönisch, Vasily Zaburdaev

Frontiers in Physics 10 (2022) | Journal | PDF


Depth of focus extension in optical coherence tomography using ultrahigh chromatic dispersion of zinc selenide

Maria N. Romodina, Kanwarpal Singh

Journal of Biophotonics 15(8) e202200051 (2022) | Journal | PDF


Precision size and refractive index analysis of weakly scattering nanoparticles in polydispersions

Anna D. Kashkanova, Martin Blessing, André Gemeinhardt, Didier Soulat, Vahid Sandoghdar

Nature Methods 19 586-593 (2022) | Journal | PDF


Best practices for reporting throughput in biomedical research

Maik Herbig, Akihiro Isozaki, Dino Di Carlo, Jochen Guck, Nao Nitta, Robert Damoiseaux, Shogo Kamikawaji, Eigo Suyama, Hirofumi Shintaku, et al.

Nature Methods 19 633-634 (2022) | Journal | PDF


mRNA Subtype of Cancer-Associated Fibroblasts Significantly Affects Key Characteristics of Head and Neck Cancer Cells

Barbora Peltanová, Hana Holcová Polanská, Martina Raudenská, Jan Balvan, Jiri Navrátil, Tomás Vicar, Jaromir Gumulec, Barbora Cechová, Martin Kräter, et al.

Cancers / Molecular Diversity Preservation International (MDPI) 14(9) 2286 (2022) | Journal | PDF


A Proposal to Perform High Contrast Imaging of Human Palatine Tonsil with Cross Polarized Optical Coherence Tomography

Gargi Sharma, Asha Parmar, Franziska Hoffmann, Katharina Geißler, Ferdinand von Eggeling, Orlando Guntinas-Lichius, Kanwarpal Singh

Photonics 9(259) (2022) | Journal | PDF


Depressive disorders are associated with increased peripheral blood cell deformability: a cross-sectional case-control study (Mood-Morph)

Andreas Walther, Anne Mackens-Kiani, Julian Eder, Maik Herbig, Christoph Herold, Clemens Kirschbaum, Jochen Guck, Lucas Wittwer, Katja Beesdo-Baum, et al.

Translational Psychiatry 12 150 (2022) | Journal | PDF


Changes in Blood Cell Deformability in Chorea-Acanthocytosis and Effects of Treatment With Dasatinib or Lithium

Felix Reichel, Martin Kräter, Kevin Peikert, Hannes Glaß, Philipp Rosendahl, Maik Herbig, Alejandro Rivera Prieto, Alexander Kihm, Giel Bosman, et al.

Frontiers in Physiology 13 852946 (2022) | Journal | PDF


Unbiased retrieval of frequency-dependent mechanical properties from noisy time-dependent signals

Shada Abuhattum, Hui-Shun Kuan, Paul Mueller, Jochen Guck, Vasily Zaburdaev

Biophysical Reports 2(3) 100054 (2022) | Journal | PDF


PiSCAT: A Python Package for Interferometric Scattering Microscopy

Houman Mirzaalian Dastjerdi, Reza Gholami Mahmoodabadi, Matthias Bär, Vahid Sandoghdar, Harald Köstler

The Journal of Open Source Software 7(71) 4024 (2022) | Journal | PDF


High-resolution vibronic spectroscopy of a single molecule embedded in a crystal

Johannes Zirkelbach, Masoud Mirzaei, Irena Deperasińska, Boleslaw Kozankiewicz, Burak Gürlek, Alexey Shkarin, Tobias Utikal, Stephan Götzinger, Vahid Sandoghdar

The Journal of Chemical Physics 156 104301 (2022) | Journal | PDF


An explicit model to extract viscoelastic properties of cells from AFM force-indentation curves

Shada Abuhattum Hofemeier, Dominic Mokbel, Paul Müller, Despina Soteriou, Jochen Guck, Sebastian Aland

iScience 25(4) 104016 (2022) | Journal | PDF


Polarization Independent Optical Coherence Tomography

Asha Parmar, Gargi Sharma, Kanwarpal Singh

IEEE Photonics Journal 14(2) (2022) | Journal | PDF


An exception to the rule? Regeneration of the injured spinal cord in the spiny mouse

Daniel Wehner, Catherina G. Becker

Developmental Cell 57(4) 415-416 (2022) | Journal


Cell surface fluctuations regulate early embryonic lineage sorting

Ayaka Yanagida, Elena Corujo-Simon, Christopher K. Revell, Preeti Sahu, Giuliano G. Stirparo, Irene M. Aspalter, Alex K. Winkel, Ruby Peters, Henry De Belly, et al.

Cell 185(5) 777-793.e20 (2022) | Journal | PDF


Quantitative imaging of Caenorhabditis elegans dauer larvae during cryptobiotic transition

Kyoohyun Kim, Vamshidhar Gade, Teymuras V. Kurzchalia, Jochen Guck

Biophysical Journal 121(7) 1219-1229 (2022) | Journal | PDF


Nonlinear microscopy using impulsive stimulated Brillouin scattering for high-speed elastography

Benedikt Krug, Nektarios Koukourakis, Jochen Guck, Jürgen Czarske

Optics Express 30(4) 4748-4758 (2022) | Journal | PDF


Cross-Polarized Optical Coherence Tomography System with Unpolarized Light

Georg R. Hartl, Asha Parmar, Gargi Sharma, Kanwarpal Singh

Photonics 9(76) (2022) | Journal | PDF


Effective cell membrane tension is independent of polyacrylamide substrate stiffness

Eva Kreysing, Jeffrey Mc Hugh, Sarah K. Foster, Kurt Andresen, Ryan D. Greenhalgh, Eva K. Pillai, Andrea Dimitracopoulos, Ulrich F. Keyser, Kristian Franze

PNAS nexus 2(1) (2022) | Journal | PDF


Single photon sources for quantum radiometry: a brief review about the current state‑of‑the‑art

Stefan Kück, Marco López, Helmuth Hofer, Hristina Georgieva, Justus Christinck, Beatrice Rodiek, Geiland Porrovecchio, Marek Smid, Stephan Götzinger, et al.

Applied Physics B: Lasers and Optics 128 28 (2022) | Journal | PDF


Label-free imaging flow cytometry for analysis and sorting of enzymatically dissociated tissues

Maik Herbig, Karen Tessmer, Martin Nötzel, Ahmad Ahsan Nawaz, Tiago Santos-Ferreira, Oliver Borsch, Sylvia J. Gasparini, Jochen Guck, Marius Ader

Scientific Reports 12 963 (2022) | Journal | PDF


Machine learning assisted real-time deformability cytometry of CD34+ cells allows to identify patients with myelodysplastic syndromes

Maik Herbig, Angela Jacobi, Manja Wobus, Heike Weidner, Anna Mies, Martin Kräter, Oliver Otto, Christian Thiede, Marie-Theresa Weickert, et al.

Scientific Reports 12 870 (2022) | Journal | PDF


Mechanical spinal cord transection in larval zebrafish and subsequent whole-mount histological processing

Nora John, Julia Kolb, Daniel Wehner

STAR Protocols 3(1) (2022) | Journal | PDF


Prevention of the foreign body response to implantable medical devices by inflammasome inhibition

Damiano G. Barone, Alejandro Carnicer-Lombarte, Panagiotis Tourlomousis, Russell S. Hamilton, Malwina Prater, Alexandra L. Rutz, Ivan B. Dimov, George G. Malliaras, Stephanie P. Lacour, et al.

Proceedings of the National Academy of Sciences of the United States of America 119(12) (2022) | Journal | PDF


Correlative all-optical quantification of mass density and mechanics of subcellular compartments with fluorescence specificity

Raimund Schlüßler, Kyoohyun Kim, Martin Nötzel, Anna Taubenberger, Shada Abuhattum, Timon Beck, Paul Müller, Shovamaye Maharana, Gheorghe Cojoc, et al.

eLife (11) e68490 (2022) | Journal | PDF


Comparison of back focal plane imaging of nitrogen vacancy centers in nanodiamond and core-shell CdSe/CdS quantum dots

Justus Christinck, Beatrice Rodiek, Marco Lopez , Hristina Georgieva, Stephan Götzinger, Stefan Kück

Journal of Physics: Conference Series 2149 012014 (2022) | Journal | PDF


Axons in the Chick Embryo Follow Soft Pathways Through Developing Somite Segments

Julia Schaeffer, Isabell P. Weber, Amelia J. Thompson, Roger J. Keynes, Kristian Franze

Frontiers in Cell and Developmental Biology 10 (2022) | Journal | PDF



2021

Real-Time Deformability Cytometry Detects Leukocyte Stiffening After Gadolinium-Based Contrast Agent Exposure

Angela Jacobi, Angela Ariza de Schellenberger, Yavuz Oguz Uca, Maik Herbig, Jochen Guck, Ingolf Sack

Investigative Radiology 56(12) 837-844 (2021) | Journal


Passive coupling of membrane tension and cell volume during active response of cells to osmosis

Chloé Roffay, Guillaume Molinard, Kyoohyun Kim, Marta Urbanska, Virginia Andrade, Victoria Barbarasa, Paulina Nowak, Vincent Mercier, José García-Calvo, et al.

Proceedings of the National Academy of Sciences of the United States of America 118(47) e2103228118 (2021) | Journal | PDF


Thermal fluctuations assist mechanical signal propagation in coiled-coil proteins

Judit Clopes, Jaeoh Shin, Marcus Jahnel, Stephan W. Grill, Vasily Zaburdaev

PHYSICAL REVIEW E 104(5) 054403 (2021) | Journal | PDF


Mapping Tumor Spheroid Mechanics in Dependence of 3D Microenvironment Stiffness and Degradability by Brillouin Microscopy

Vaibhav Mahajan, Timon Beck, Paulina Gregorczyk, André Ruland, Simon Alberti, Jochen Guck, Carsten Werner, Raimund Schlüßler, Anna V. Taubenberger

Cancers / Molecular Diversity Preservation International (MDPI) 13(21) 5549 (2021) | Journal | PDF


Optimized analysis for sensitive detection and analysis of single proteins via interferometric scattering microscopy

Houman Mirzaalian Dastjerdi, Mahyar Dahmardeh, André Gemeinhardt, Reza Gholami Mahmoodabadi, Harald Köstler, Vahid Sandoghdar

Journal of Physics D: Applied Physics 55 054002 (2021) | Journal


StemBond hydrogels control the mechanical microenvironment for pluripotent stem cells

Céline Labouesse, Bao Xiu Tan, Chibeza C. Agley, Moritz Hofer, Alexander K. Winkel, Giuliano G. Stirparo, Hannah T. Stuart, Christophe M. Verstreken, Carla Mulas, et al.

Nature Communications 12(1) (2021) | Journal | PDF


Vinculin is required for neuronal mechanosensing but not for axon outgrowth

De-Yao Wang, Cristina Melero, Ashwaq Albaraky, Paul Atherton, Karin A. Jansen, Andrea Dimitracopoulos, Federico Dajas-Bailador, Adam Reid, Kristian Franze, et al.

Experimental Cell Research 407(2) (2021) | Journal


RNA polymerase II clusters form in line with surface condensation on regulatory chromatin

Agnieszka Pancholi, Tim Klingberg, Weichun Zhang, Roshan Prizak, Irina Mamontova, Amra Noa, Marcel Sobucki, Andrei Yu Kobitski, Gerd Ulrich Nienhaus, et al.

MOLECULAR SYSTEMS BIOLOGY 17(9) e10272 (2021) | Journal | PDF


Single-molecule vacuum Rabi splitting: four-wave mixing and optical switching at the single-photon level

André Pscherer, Manuel Meierhofer, Daqing Wang, Hrishikesh Kelkar, Diego-Martin Cano, Tobias Utikal, Stephan Götzinger, Vahid Sandoghdar

Physical Review Letters 127 133603 (2021) | Journal


suggested by editors

Engineering long-lived vibrational states for an organic molecule

Burak Gürlek, Vahid Sandoghdar, Diego-Martin Cano

Physical Review Letters 127 123603 (2021) | Journal


Matrix stiffness mechanosensing modulates the expression and distribution of transcription factors in Schwann cells

Gonzalo Rosso, Daniel Wehner, Christine Schweitzer, Stephanie Möllmert, Elisabeth Sock, Jochen Guck, Victor Shahin

Bioengineering & Translational Medicine e10257 (2021) | Journal | PDF


Physical phenotype of blood cells is altered in COVID-19

Markéta Kubánková, Bettina Hohberger, Jakob Hoffmanns, Julia Fürst, Martin Herrmann, Jochen Guck, Martin Kräter

Biophysical Journal 120(14) 2838-2847 (2021) | Journal | PDF


The Potential of OMICs Technologies for the Treatment of Immune-Mediated Inflammatory Diseases

Charles Gwellem Anchang, Cong Xu, Maria Gabriella Raimondo, Raja Atreya, Andreas Maier, Georg Schett, Vasily Zaburdaev, Simon Rauber, Andreas Ramming

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 22(14) 7506 (2021) | Journal | PDF


HIF2α is a Direct Regulator of Neutrophil Motility

Sundary Sormendi, Mathieu Deygas, Anupam Sinha, Anja Krüger, Ioannis Kourtzelis, Gregoire Le Lay, Mathilde Bernard, Pablo J. Sáez, Michael Gerlach, et al.

Blood 137(24) 3416-3427 (2021) | Journal | PDF


A unique macrophage subpopulation signals directly to progenitor cells to promote regenerative neurogenesis in the zebrafish spinal cord

Leonardo Cavone, Tess McCann, Louisa K. Drake, Erika A. Aguzzi, Ana-Maria Oprisoreanu, Elisa Pedersen, Soe Sandi, Jathurshan Selvarajah, Themistoklis M. Tsarouchas, et al.

Developmental Cell 56(11) 1617-+ (2021) | Journal


Know How to Regrow-Axon Regeneration in the Zebrafish Spinal Cord

Vasiliki Tsata, Daniel Wehner

Cells 10(6) 1404 (2021) | Journal | PDF


Efficient and gentle delivery of molecules into cells with different elasticity via Progressive Mechanoporation

Alena Uvizl, Ruchi Goswami, Shanil Durgeshkumar Gandhi, Martina Augsburg, Frank Buchholz, Jochen Guck, Jörg Mansfeld, Salvatore Girardo

Lab on a Chip 21 2437-2452 (2021) | Journal | PDF


The hierarchical packing of euchromatin domains can be described as multiplicative cascades

Amra Noa, Hui-Shun Kuan, Vera Aschmann, Vasily Zaburdaev, Lennart Hilbert

PLOS COMPUTATIONAL BIOLOGY 17(5) e1008974 (2021) | Journal | PDF


On Quantum Efficiency Measurements and Plasmonic Nano-Antennas

Korenobu Matsuzaki, Hsuan-Wei Liu, Stephan Götzinger, Vahid Sandoghdar

ACS Photonics 8 1508-1521 (2021) | Journal


Depth encoded input polarisation independent swept source cross-polarised optical coherence tomography probe

Katharina Blessing, Judith Schirmer, Asha Parmar, Kanwarpal Singh

Journal of Physics D: Applied Physics 54 305401 (2021) | Journal | PDF


Rapid computational cell-rotation around arbitrary axes in 3D with multi-core fiber

Jiawei Sun, Nektarios Koukourakis, Jochen Guck, Jürgen W. Czarske

Biomedical Optics Express 12(6) 3423-3437 (2021) | Journal | PDF


Single organic molecules for photonic quantum technologies

C. Toninelli, I. Gerhardt, A.S. Clark, A. Reserbat-Plantey, Stephan Götzinger, Z. Ristanovic, M. Colautti, P. Lombardi, K.D. Major, et al.

Nature Materials 2021 (2021) | Journal


Toward deep biophysical cytometry: prospects and challenges

Kelvin C.M. Lee, Jochen Guck, Keisuke Goda, Kevin K. Tsia

Trends in Biotechnology 39(12) 1249-1262 (2021) | Journal


Portable Optical Coherence Elastography System With Flexible and Phase Stable Common Path Optical Fiber Probe

Asha Parmar, Gargi Sharma, Shivani Sharma, Kanwarpal Singh

IEEE Access 9 56041-56048 (2021) | Journal | PDF


The Xenopus spindle is as dense as the surrounding cytoplasm

Abin Biswas, Kyoohyun Kim, Gheorghe Cojoc, Jochen Guck, Simone Reber

Developmental Cell 56(7) 967-975 (2021) | Journal


Nanoscopic charge fluctuations in a gallium phosphide waveguide measured by single molecules

Alexey Shkarin, Dominik Rattenbacher, Jan Renger, Simon Hönl, Tobias Utikal, Paul Seidler, Stephan Götzinger, Vahid Sandoghdar

Physical Review Letters 126 133602 (2021) | Journal


Compliant Substrates Enhance Macrophage Cytokine Release and NLRP3 Inflammasome Formation During Their Pro-Inflammatory Response

Joan-Carles Escolano, Anna V. Taubenberger, Shada Abuhattum, Christine Schweitzer, Aleeza Farrukh, Aránzazu del Campo, Clare E. Bryant, Jochen Guck

Frontiers in Cell and Developmental Biology 9 639815 (2021) | Journal | PDF


Precision single-particle localization using radial variance transform

Anna D. Kashkanova, Alexey Shkarin, Reza Gholami Mahmoodabadi, Martin Blessing, Yazgan Tuna, André Gemeinhardt, Vahid Sandoghdar

Optics Express 29 11070-11083 (2021) | Journal


Chromatic Dispersion Based Wide-Band, Fiber-Coupled, Tunable Light Source for Hyperspectral Imaging

Gargi Sharma, Sheeza Kainat Naveed, Asha Parmar, Kanwarpal Singh

IEEE Access 9 50538-50545 (2021) | Journal | PDF


AIDeveloper: deep learning image classification in life science and beyond

Martin Kräter, Shada Abuhattum Hofemeier, Despina Soteriou, Angela Jacobi, Thomas Krüger, Jochen Guck, Maik Herbig

Advanced Science 2003743 (2021) | Journal | PDF


Mechanical properties of cell- and microgel bead-laden oxidized alginate-gelatin hydrogels

Thomas Distler, Lena Kretzschmar, Dominik Schneidereit, Salvatore Girardo, Ruchi Goswami, Oliver Friedrich, Rainer Detsch, Jochen Guck, Aldo R. Boccaccini, et al.

Biomaterials Science (9) 3051-3068 (2021) | Journal | PDF


Transcription organizes euchromatin via microphase separation

Lennart Hilbert, Yuko Sato, Ksenia Kuznetsova, Tommaso Bianucci, Hiroshi Kimura, Frank Jülicher, Alf Honigmann, Vasily Zaburdaev, Nadine L. Vastenhouw

Nature Communications 12 1360 (2021) | Journal | PDF


Theory for Durotactic Axon Guidance

Hadrien Oliveri, Kristian Franze, Alain Goriely

Physical Review Letters 126(11) (2021) | Journal


A switch in pdgfrb+ cell-derived ECM composition prevents inhibitory scarring and promotes axon regeneration in the zebrafish spinal cord

Vasiliki Tsata, Stephanie Möllmert, Christine Schweitzer, Julia Kolb, Conrad Möckel, Benjamin Böhm, Gonzalo Rosso, Christian Lange, Mathias Lesche, et al.

Developmental Cell 56(4) 509-524 (2021) | Journal


Continuum Theory of Active Phase Separation in Cellular Aggregates

Hui-Shun Kuan, Wolfram Poenisch, Frank Juelicher, Vasily Zaburdaev

PHYSICAL REVIEW LETTERS 126(1) 018102 (2021) | Journal | PDF



2020

Polarization-Encoded Colocalization Microscopy at Cryogenic Temperatures

Daniel Böning, Franz Wieser, Vahid Sandoghdar

ACS Photonics 8 194-201 (2020) | Journal


Kerker effect, superscattering, and scattering dark states in atomic antennas

Rasoul Alaee Khanghah, Akbar Safari, Vahid Sandoghdar, Robert W. Boyd

Physical Review Research 2 043409 (2020) | Journal


Differential diffusional properties in loose and tight docking prior to membrane fusion

Agata Witkowska, Susann Spindler, Reza Gholami Mahmoodabadi, Vahid Sandoghdar, Reinhard Jahn

Biophysical Journal 119 2431-2439 (2020) | Journal


Reactive oligodendrocyte progenitor cells (re-)myelinate the regenerating zebrafish spinal cord

Vasiliki Tsata, Volker Kroehne, Daniel Wehner, Fabian Rost, Christian Lange, Cornelia Hoppe, Thomas Kurth, Susanne Reinhardt, Andreas Petzold, et al.

Development 147(24) dev193946 (2020) | Journal


Maturation of Monocyte-Derived DCs Leads to Increased Cellular Stiffness, Higher Membrane Fluidity, and Changed Lipid Composition

Jennifer J. Lühr, Nils Alex, Lukas Amon, Martin Kräter, Markéta Kubánková, Erdinc Sezgin, Christian H. K. Lehmann, Lukas Heger, Gordon F. Heidkamp, et al.

Frontiers in Immunology 11 590121 (2020) | Journal | PDF


Soft Polydimethylsiloxane-Supported Lipid Bilayers for Studying T Cell Interactions

Anna H. Lippert, Ivan B. Dimov, Alexander K. Winkel, Jane Humphrey, James McColl, Kevin Y. Chen, Ana M. Santos, Edward Jenkins, Kristian Franze, et al.

Biophysical Journal 120(1) 35-45 (2020) | Journal | PDF


Mechanical Adaptability of Tumor Cells in Metastasis

Valentin Gensbittel, Martin Kräter, Sébastien Harlepp, Ignacio Busnelli, Jochen Guck, Jacky G. Goetz

Developmental Cell (2020) | Journal


Optical quantification of intracellular mass density and cell mechanics in 3D mechanical confinement

Sadra Bakhshandeh, Hubert Taïeb, Raimund Schlüßler, Kyoohyun Kim, Timon Beck, Anna Taubenberger, Jochen Guck, Amaia Cipitria

Soft Matter (2020) | Journal | PDF


Estrogens Determine Adherens Junction Organization and E-Cadherin Clustering in Breast Cancer Cells via Amphiregulin

Philip Bischoff, Marja Kornhuber, Sebastian Dunst, Jakob Zell, Beatrix Fauler, Thorsten Mielke, Anna V. Taubenberger, Jochen Guck, Michael Oelgeschlaeger, et al.

iScience 23(11) 101683 (2020) | Journal | PDF


The Relative Densities of Cytoplasm and Nuclear Compartments Are Robust against Strong Perturbation

Kyoohyun Kim, Jochen Guck

Biophysical Journal 119(10) 1946-1957 (2020) | Journal | PDF


Grain Dependent Growth of Bright Quantum Emitters in Hexagonal Boron Nitride

Noah Mendelson, Luis Morales-Inostroza, Chi Li, Ritika Ritika, Minh Anh Phan Nguyen, Jacqueline Loyola-Echeverria, Sejeong Kim, Stephan Götzinger, Milos Toth, et al.

Advanced Optical Materials (2020) | Journal


High-precision protein-tracking with interferometric scattering microscopy

Richard W. Taylor, Cornelia Holler, Reza Gholami Mahmoodabadi, Michelle Küppers, Houman Mirzaalian Dastjerdi, Vasily Zaburdaev, Alexandra Schambony, Vahid Sandoghdar

Frontiers in Cell and Developmental Biology 8 590158 (2020) | Journal | PDF


Acquired demyelination but not genetic developmental defects in myelination leads to brain tissue stiffness changes

Dominic Eberle, Georgia Fodelianaki, Thomas Kurth, Anna Jagielska, Stephanie Möllmert, Elke Ulbricht, Katrin Wagner, Anna V. Taubenberger, Nicolas Träber, et al.

Brain Multiphysics 1 100019 (2020) | Journal | PDF


Smartphone‐based multimodal tethered capsule endoscopic platform for white‐light, narrow‐band, and fluorescence/autofluorescence imaging

Gargi Sharma, Oana-Maria Thoma, Katharina Blessing, Robert Gall, Maximilian Waldner, Kanwarpal Singh

Journal of Biophotonics 14 e202000324 (2020) | Journal | PDF


Combined fluorescence, optical diffraction tomography and Brillouin microscopy

Raimund Schlüßler, Kyoohyun Kim, Martin Nötzel, Anna Taubenberger, Shada Abuhattum Hofemeier, Timon Beck, Paul Müller, Shovamayee Maharana, Gheorghe Cojoc, et al.

bioRxiv 2020.10.30.361808 (2020) Preprint | PDF


Quantitative phase microscopy enables precise and efficient determination of biomolecular condensate composition

Patrick M. McCall, Kyoohyun Kim, Anatol W. Fritsch, J.M. Iglesias-Artola, L.M. Jawerth, Jie Wang, M. Ruer, J. Peychl, Andrey Poznyakovskiy, et al.

bioRxiv 2020.10.25.352823 (2020) Preprint | PDF


Liquid Phase Separation Controlled by pH

Omar Adame-Arana, Christoph A. Weber, Vasily Zaburdaev, Jacques Prost, Frank Julicher

Biophysical Journal 119(8) 1590-1605 (2020) | Journal | PDF


Proteomic, biomechanical and functional analyses define neutrophil heterogeneity in systemic lupus erythematosus

Kathleen R. Bashant, Angel M. Aponte, Davide Randazzo, Paniz Rezvan Sangsari, Alexander J. T. Wood, Jack A. Bibby, Erin E. West, Arlette Vassallo, Zerai G. Manna, et al.

Annals of the Rheumatic Diseases 80(2) 209-218 (2020) | Journal


Nanostructured alkali-metal vapor cells

Tom F. Cutler, William J. Hamlyn, Jan Renger, Kate A. Whittaker, Danielle Pizzey, Ifan G. Hughes, Vahid Sandoghdar, Charles S. Adams

Physical Review Applied 14 034054 (2020) | Journal


suggested by editors

Exogenous ethanol induces a metabolic switch that prolongs the survival of Caenorhabditis elegansdauer larva and enhances its resistance to desiccation

Damla Kaptan, Sider Penkov, Xingyu Zhang, Vamshidhar R. Gade, Bharath Kumar Raghuraman, Roberta Galli, Julio L. Sampaio, Robert Haase, Edmund Koch, et al.

Aging Cell 19(10) e13214 (2020) | Journal | PDF


Buckling of an Epithelium Growing under Spherical Confinement

Anastasiya Trushko, Ilaria Di Meglio, Aziza Merzouki, Carles Blanch-Mercader, Shada Abuhattum, Jochen Guck, Kevin Alessandri, Pierre Nassoy, Karsten Kruse, et al.

Developmental Cell 54(5) 655-668 (2020) | Journal | PDF


Partial cloaking of a gold particle by a single molecule

Johannes Zirkelbach, Benjamin Gmeiner, Jan Renger, Pierre Türschmann, Tobias Utikal, Stephan Götzinger, Vahid Sandoghdar

Physical Review Letters 125 103603 (2020) | Journal


suggested by editors

Quantum metamaterials with magnetic response at optical frequencies

Rasoul Alaee Khanghah, Burak Gürlek, Mohammad Albooyeh, Diego-Martin Cano, Vahid Sandoghdar

Physical Review Letters 125 063601 (2020) | Journal


suggested by editors

Point spread function in interferometric scattering microscopy (iSCAT). Part I: aberrations in defocusing and axial localization

Reza Gholami Mahmoodabadi, Richard W. Taylor, Martin Kaller, Susann Spindler, Mahdi Mazaheri, Kiarash Kasaian, Vahid Sandoghdar

Optics Express 28 25969-25988 (2020) | Journal


Truncated Metallo-Dielectric Omnidirectional Reflector: Collecting Single Photons in the Fundamental Gaussian Mode with 95% Efficiency

Wancong Li, Luis Morales-Inostroza, Weiwang Xu, Pu Zhang, Stephan Götzinger, Xue-Wen Chen

ACS Photonics 7 (2020) | Journal | PDF


Molecule-photon interactions in phononic environments

Michael Reitz, Christian Sommer, Burak Gürlek, Vahid Sandoghdar, Diego-Martin Cano, Claudiu Genes

Physical Review Research 2 033270 (2020) | Journal | PDF


Point spread function in interferometric scattering microscopy (iSCAT). Part I: aberrations in defocusing and axial localization

Reza Gholami Mahmoodabadi, Richard W. Taylor, Martin Kaller, Susann Spindler, Mahdi Mazaheri, Kiarash Kasaian, Vahid Sandoghdar

Optics Express 28 (2020) | Journal | PDF


Stretching and heating cells with light-nonlinear photothermal cell rheology

Constantin Huster, Devavrat Rekhade, Adina Hausch, Saeed Ahmed, Nicolas Hauck, Julian Thiele, Jochen Guck, Klaus Kroy, Gheorghe Cojoc

New Journal of Physics 22(8) 085003 (2020) | Journal | PDF


Sub-nanometer resolution in single-molecule photoluminescence imaging

Ben Yang, Gong Chen, Atif Ghafoor, Yufan Zhang, Yao Zhang, Yang Zhang, Yi Luo, Jinlong Yang, Vahid Sandoghdar, et al.

Nature Photonics 14 693-699 (2020) | Journal


Novel input polarisation independent endoscopic cross‐polarised optical coherence tomography probe

Katharina Blessing, Judith Schirmer, Gargi Sharma, Kanwarpal Singh

Journal of Biophotonics e202000134 (2020) | Journal | PDF


Mechanochemical Crosstalk Produces Cell-Intrinsic Patterning of the Cortex to Orient the Mitotic Spindle

Andrea Dimitracopoulos, Pragya Srivastava, Agathe Chaigne, Zaw Win, Roie Shlomovitz, Oscar M. Lancaster, Maël Le Berre, Matthieu Piel, Kristian Franze, et al.

Current biology: CB 30(18) 3687-3696.e4 (2020) | Journal | PDF


Ultrahigh-speed imaging of rotational diffusion on a lipid bilayer

Mahdi Mazaheri, Jens Ehrig, Alexey Shkarin, Vasily Zaburdaev, Vahid Sandoghdar

Nano Letters 20 7213-7219 (2020) | Journal | PDF


Prevalence of IgG and IgM antibodies to SARS-CoV-2 among clinic staff and patients

Marcus Inyama Asuquo, Emmanuel Effa, Akaninyene Otu, Okokon Ita, Ubong Udoh, Victor Umoh, Oluwabukola Gbotosho, Anthonia Ikpeme, Soter Ameh, et al.

2020.07.02.20145441 (2020) | PDF


Towards brain-tissue-like biomaterials

Eneko Axpe, Gorka Orive, Kristian Franze, Eric A. Appel

Nature Communications 11(1) (2020) | Journal | PDF


Spatial heterogeneity of cell-matrix adhesive forces predicts human glioblastoma migration

Rasha Rezk, Bill Zong Jia, Astrid Wendler, Ivan Dimov, Colin Watts, Athina E. Markaki, Kristian Franze, Alexandre J. Kabla

Neuro-Oncology Advances 2(1) (2020) | Journal | PDF


Integrating Chemistry and Mechanics: The Forces Driving Axon Growth

Kristian Franze

Annual Review of Cell and Developmental Biology 36 61-83 (2020) | Journal


Nano-Optics in 2020 ± 20

Vahid Sandoghdar

Nano Letters 20 4721-4723 (2020) | Journal


Paclitaxel Drug-Coated Balloon Angioplasty Suppresses Progression and Inflammation of Experimental Atherosclerosis in Rabbits

Mohammed M. Chowdhury, Kanwarpal Singh, Mazen S. Albaghdadi, Haitham Khraishah, Adam Mauskapf, Chase W. Kessinger, Eric A. Osborn, Stephan Kellnberger, Zhonglie Piao, et al.

JACC: Basic to Translational Science 5(7) 685-695 (2020) | PDF


Temperature controlled high-throughput magnetic tweezers show striking difference in activation energies of replicating viral RNA-dependent RNA polymerases

Mona Seifert, Pauline van Nies, Flávia S. Papini, Jamie J. Arnold, Minna M. Poranen, Craig E. Cameron, Martin Depken, David Dulin

Nucleic Acids Research 48(10) 5591-5602 (2020) | Journal | PDF


DryMass: handling and analyzing quantitative phase microscopy images of spherical, cell-sized objects

Paul Müller, Gheorghe Cojoc, Jochen Guck

BMC Bioinformatics (21) 221 1-8 (2020) | Journal


Intelligent image-based deformation-assisted cell sorting with molecular specificity

Ahmad Ahsan Nawaz, Marta Urbanska, Maik Herbig, Martin Nötzel, Martin Kräter, Philipp Rosendahl, Christoph Herold, Nicole Töpfner, Markéta Kubánková, et al.

Nature Methods 17(6) 595-599 (2020) | Journal | PDF


A comparison of microfluidic methods for high-throughput cell deformability measurements

Marta Urbanska, Hector E. Munoz, Josephine Shaw Bagnall, Oliver Otto, Scott R. Manalis, Dino Di Carlo, Jochen Guck

Nature Methods 17(6) 587-593 (2020) | Journal | PDF


High spatiotemporal resolution data from a custom magnetic tweezers instrument

Eugeniu Ostrofet, Flavia S. Papini, David Dulin

Data in Brief 30 105397 (2020) | Journal


Recent progress and current opinions in Brillouin Microscopy for life science application

Giuseppe Antonacci, Timon Beck, Alberto Bilenca, Jürgen Czarske, Kareem Elsayad, Jochen Guck, Kyoohyun Kim, Benedikt Krug, Francesca Palombo, et al.

Biophysical Reviews 12(3) 615-624 (2020) | Journal | PDF


Cortical cell stiffness is independent of substrate mechanics

Johannes Rheinlaender, Andrea Dimitracopoulos, Bernhard Wallmeyer, Nils M. Kronenberg, Kevin J. Chalut, Malte C. Gather, Timo Betz, Guillaume Charras, Kristian Franze

Nature Materials 19(9) 1019-1025 (2020) | Journal


RNA-Induced Conformational Switching and Clustering of G3BP Drive Stress Granule Assembly by Condensation

Jordina Guillén Boixet , Andrii Kopach , Alex S. Holehouse, Sina Wittmann , Marcus Jahnel, Raimund Schlüssler, Kyoohyun Kim, Irmela Trussina , Jie Wang , et al.

Cell 181(2) 346-361 (2020) | Journal


Input polarization-independent polarization-sensitive optical coherence tomography using a depolarizer

Shivani Sharma, Georg Hartl, Sheeza K. Naveed, Katharina Blessing, Gargi Sharma, Kanwarpal Singh

Review of Scientific Instruments 91(4) 043706 (2020) | Journal | PDF


The mechanics of myeloid cells

Kathleen R. Bashant, Nicole Toepfner, Christopher J. Day, Nehal N. Mehta, Mariana J. Kaplan, Charlotte Summers, Jochen Guck, Edwin R. Chilvers

Biology of the Cell 112(4) 103-112 (2020) | Journal


Ensemble-induced strong light-matter coupling of a single quantum emitter

Stefan Schütz, Johannes Schachenmayer, David Hagenmüller, Gavin K. Brennen, Thomas Volz, Vahid Sandoghdar, Thomas W. Ebbesen, Claudiu Genes, Guido Pupillo

Physical Review Letters 124 113602 (2020) | Journal


Roadmap on quantum light spectroscopy

Shaul Mukamel, Matthias Freyberger, Wolfgang Schleich, Marco Bellini, Alessandro Zavatta, Gerd Leuchs, Christine Silberhorn, Robert W. Boyd, Luis Lorenzo Sánchez-Soto, et al.

Journal of Physics B: Atomic, Molecular and Optical Physics; IOP Publishing, Bristol 53 7 (2020) | Journal


Mechanical Regulation of Neurite Polarization and Growth: A Computational Study

Maximilian A. H. Jakobs, Kristian Franze, Assaf Zemel

Biophysical Journal 118(8) 1914-1920 (2020) | Journal | PDF


Oncogenic signaling alters cell shape and mechanics to facilitate cell division under confinement

Helen K Matthews, Sushila Ganguli, Katarzyna Plak, Anna V. Taubenberger, Zaw Win, Max Williamson, Matthieu Piel, Jochen Guck, Buzz Baum

Developmental Cell 52(5) 563-573 (2020) | Journal


Swept source cross-polarized optical coherence tomography for any input polarized light

Gargi Sharma, Shivani Sharma, Katharina Blessing, Georg Hartl, Maximilian Waldner, Kanwarpal Singh

Journal of Optics 22(4) 045301 | Journal


Defining the Adult Neural Stem Cell Niche Proteome Identifies Key Regulators of Adult Neurogenesis

Jacob Kjell, Judith Fischer-Sternjak, Amelia J. Thompson, Christian Friess, Matthew J. Sticco, Favio Salinas, Jürgen Cox, David C. Martinelli, Jovica Ninkovic, et al.

Cell Stem Cell 26(2) 277-293.e8 (2020) | Journal | PDF


The Costs of Close Contacts: Visualizing the Energy Landscape of Cell Contacts at the Nanoscale

Klara Kulenkampff, Anna H. Lippert, James McColl, Ana Mafalda Santos, Aleks Ponjavic, Edward Jenkins, Jane Humphrey, Alexander Winkel, Kristian Franze, et al.

Biophysical Journal 118(6) 1261-1269 (2020) | Journal | PDF


Zebrafish spinal cord repair is accompanied by transient tissue stiffening

Stephanie Möllmert, Maria A. Kharlamova, Tobias Hoche, Anna V. Taubenberger, Shada Abuhattum, Veronika Kuscha, Thomas Kurth, Michael Brand, Jochen Guck

Biophysical Journal 118(2) 448-463 (2020) | Journal


The mechanics of myeloid cells

Kathleen R. Bashant, Nicole Toepfner, Christopher J. Day, Nehal N. Mehta, Mariana J. Kaplan, Charlotte Summers, Jochen Guck, Edwin A Chilvers

Biology of the Cell 112 103-112 (2020) | Journal



2019

High-yield fabrication of DNA and RNA constructs for single molecule force and torque spectroscopy experiments

Flavia S. Papini, Mona Seifert, David Dulin

Nucleic Acids Research 47(22) e144 (2019) | Journal


All fiber polarization insensitive detection for spectrometer based optical coherence tomography using optical switch

David Odeke Otuya, Gargi Sharma, Guillermo J. Tearney, Kanwarpal Singh

OSA Continuum 2(12) 3465-3469 (2019) | Journal | PDF


Polyacrylamide Bead Sensors for in vivo Quantification of Cell-Scale Stress in Zebrafish Development

Nicole Träber, Klemens Uhlmann, Salvatore Girardo, Gokul Kesavan, Katrin Wagner, Jens Friedrichs, Ruchi Goswami, K Bai, Michael Brand, et al.

Scientific Reports 9(1) 17031 1-14 (2019) | Journal


Colloidal crystals of compliant microgel beads to study cell migration and mechanosensitivity in 3D

Katrin Wagner, Salvatore Girardo, Ruchi Goswami, Gonzalo Rosso, Elke Ulbricht, Paul Müller, Despina Soteriou, Nicole Träber, Jochen Guck

Soft Matter 15(47) 9776-9787 (2019) | Journal | PDF


CASP1 variants influence subcellular caspase-1 localization, pyroptosome formation, pro-inflammatory cell death and macrophage deformability

Franz Kapplusch, Felix Schulze, Sabrina Rabe-Matschewsky, Susanne Russ, Maik Herbig, Michael Christian Heymann, Katharina Schoepf , Robert Stein, Ursula Range, et al.

Clinical Immunology 208 108232 (2019) | Journal


Interaction of Axonal Chondrolectin with Collagen XIXa1 Is Necessary for Precise Neuromuscular Junction Formation

Ana-Maria Oprisoreanu, Hannah L. Smith, Sukrat Arya, Richard Webster, Zhen Zhong, Daniel Wehner, Marcos J. Cardozo, Thomas Becker, Kevin Talbot, et al.

Cell Reports 29(5) 1082-+ (2019) | Journal


Cell Mechanics Based Computational Classification of Red Blood Cells Via Unsupervised Machine Intelligence Applied to Morpho-Rheological Markers

Yan Ge, Philipp Rosenddahl, Claudio Duran, Sara Ciucci, Nicole Töpfner, Jochen Guck, Carlo Vittorio Cannistraci

IEEE/ACM Transactions on Computational Biology and Bioinformatics (2019) | Journal


Low cost scalable monolithic common path probe design for the application in endoscopic optical coherence tomography

Katharina Blessing, Shivani Sharma, Alexander Gumann, Kanwarpal Singh

Engineering Research Express 1(2) 025008 (2019) | Journal


Rectification of Bacterial Diffusion in Microfluidic Labyrinths

Ariane Weber, Marco Bahrs, Zahra Alirezai, Xingyu Zhang, Carsten Beta, Vasily Zaburdaev

Frontiers in Physics 7 148 (2019) | Journal | PDF


Histone H3K27 acetylation precedes active transcription during zebrafish zygotic genome activation as revealed by live-cell analysis

Yuko Sato, Lennart Hilbert, Haruka Oda, Yinan Wan, John M. Heddleston, Teng-Leong Chew, Vasily Zaburdaev, Philipp Keller, Timothee Lionnet, et al.

Development 146 SI(19) UNSP dev179127 (2019) | Journal | PDF


Mechanical changes of peripheral nerve tissue microenvironment and their structural basis during development

Gonzalo Rosso, Jochen Guck

APL Bioengineering 3(3) 036107 (2019) | Journal


Some thoughts on the future of cell mechanics

Jochen Guck

Biophysical Review 11(15) 667-670 (2019) | Journal


Targeting Mechanoresponsive Proteins in Pancreatic Cancer: 4-Hydroxyacetophenone Blocks Dissemination and Invasion by Activating MYH14

Alexandra Surcel, Eric S. Schiffhauer, Dustin G. Thomas, Qingfeng Zhu, Kathleen T. DiNapoli, Maik Herbig, Oliver Otto, Hoku West-Foyle, Angela Jacobi, et al.

Cancer Research 79(18) 4665-4678 (2019) | Journal | PDF


nanite: using machine learning to assess the quality of atomic force microscopy-enabled nano-indentation data

Paul Müller, Shada Abuhattum Hofemeier, Stephanie Möllmert, Elke Ulbricht, Anna V. Taubenberger, Jochen Guck

BMC Bioinformatics (20) 465 (2019) | Journal | PDF


3D Microenvironment Stiffness Regulates Tumor Spheroid Growth and Mechanics via p21 and ROCK

Anna V. Taubenberger, Salvatore Girardo, Nicole Träber, Elisabeth Fischer-Friedrich, Martin Kräter, Katrin Wagner, Thomas Kurth, Isabel Richter, Barbara Haller, et al.

Advanced Biosystems 3(9) 1900128 (2019) | Journal


Interferometric Scattering (iSCAT) Microscopy & Related Techniques

Richard W. Taylor, Vahid Sandoghdar

Label-Free Super-Resolution Microscopy 25-65 (2019) | Book Chapter


Effects of rigosertib on the osteo-hematopoietic niche in myelodysplastic syndromes

Ekaterina Balaian, Heike Weidner, Manja Wobus, Ulrike Baschant, Angela Jacobi, Anna Mies, Martin Bornhäuser, Jochen Guck, Lorenz C Hofbauer, et al.

Annals of Hematology 98(9) 2063-2072 (2019) | Journal


Coherent nonlinear optics of quantum emitters in nanophotonic waveguides

Pierre Türschmann, Hanna Le Jeannic, Signe F. Simonsen, Harald Haakh, Stephan Götzinger, Vahid Sandoghdar, Peter Lodahl, Nir Rotenberg

Nanophotonics 8 1641-1657 (2019) | Journal


Interferometric Scattering Microscopy: Seeing Single Nanoparticles and Molecules via Rayleigh Scattering

Richard W. Taylor, Vahid Sandoghdar

Nano Letters 19 4827-4835 (2019) | Journal


High-Throughput Microfluidic Characterization of Erythrocyte Shapes and Mechanical Variability

Felix Reichel, Johannes Mauer, Ahmad Ahsan Nawaz, Gerhard Gompper, Jochen Guck, Dmitry A. Fedosov

Biophysical Journal 117(1) 14-24 (2019) | Journal


Coherent coupling of single molecules to on-chip ring resonators

Dominik Rattenbacher, Alexey Shkarin, Jan Renger, Tobias Utikal, Stephan Götzinger, Vahid Sandoghdar

New Journal of Physics 21 062002 (2019) | Journal


Analysis of biomechanical properties of hematopoietic stem and progenitor cells with Real-Time Deformability Cytometry

Angela Jacobi, Philipp Rosendahl, Martin Kräter, Marta Urbanska, Maik Herbig, Jochen Guck

Methods in Molecular Biology 2017 135-148 (2019) | Book Chapter


Electrically driven single-photon superradiance from molecular chains in a plasmonic nanocavity

Yang Luo, Gong Chen, Yang Zhang, Li Zhang, Yunjie Yu, Fanfang Kong, Xiaojun Tian, Yao Zhang, Chongxin Shan, et al.

Physical Review Letters 122 233901 (2019) | Journal


Morpho-Rheological Fingerprinting of Rod Photoreceptors Using Real-Time Deformability Cytometry

Tiago Santos-Ferreira, Maik Herbig, Oliver Otto, Madalena Carido, Mike O. Karl, Stylianos Michalakis, Jochen Guck, Marius Ader

Cytometry A 95(11) 1145-1157 (2019) | Journal | PDF


How bacterial cells and colonies move on solid substrates

Wolfram Poenisch, Christoph A. Weber, Vasily Zaburdaev

Physical Review E 99(4) 042419 (2019) | Journal


Nanoprinting organic molecules at the quantum level

Claudio U. Hail, Christian Höller, Korenobu Matsuzaki, Patrik Rohner, Jan Renger, Vahid Sandoghdar, Dimos Poulikakos, Hadi Eghlidi

Nature Communications 10 1880 (2019) | Journal


Spheroid Culture of Mesenchymal Stromal Cells Results in Morphorheological Properties Appropriate for Improved Microcirculation

Stefanie Tietze, Martin Kräter, Angela Jacobi, Anna Taubenberger, Maik Herbig, Rebekka Wehner, Marc Schmitz, Oliver Otto, Catrin List, et al.

Advanced Science 6(8) 1802104 (2019) | Journal | PDF


Interferometric scattering microscopy reveals microsecond nanoscopic protein motion on a live cell membrane

Richard W. Taylor, Reza Gholami Mahmoodabadi, Verena Rauschenberger, Andreas Giessl, Alexandra Schambony, Vahid Sandoghdar

Nature Photonics 13 480-487 (2019) | Journal


Turning a molecule into a coherent two-level quantum system

Daqing Wang, Hrishikesh Kelkar, Diego-Martin Cano, Dominik Rattenbacher, Alexey Shkarin, Tobias Utikal, Stephan Götzinger, Vahid Sandoghdar

Nature Physics 15 483-489 (2019) | Journal


Identifying the mechanism for superdiffusivity in mouse fibroblast motility

Giuseppe Passucci, Megan E. Brasch, James H. Henderson, Vasily Zaburdaev, M. Lisa Manning

PLoS Computational Biology 15(2) e1006732 (2019) | Journal | PDF


The shape of pinned forced polymer loops

Wenwen Huang, Vasily Zaburdaev

Soft Matter 15(8) 1785-1792 (2019) | Journal | PDF


High throughput magnetic tweezers to characterize inhibitors of RNA virus replication

David Dulin

Virologie 23(6) 373-375 (2019) | Journal



2018

Label-Free Imaging of Single Proteins Secreted from Living Cells via iSCAT Microscopy

André Gemeinhardt, Matthew Paul McDonald, Katharina König, Michael Aigner, Andreas Mackensen, Vahid Sandoghdar

Journal of Visualized Experiments e58486 (2018) | Journal


Intracellular Mass Density Increase Is Accompanying but Not Sufficient for Stiffening and Growth Arrest of Yeast Cells

Shada Abuhattum, Kyoohyun Kim, Titus M. Franzmann, Anne Esslinger, Daniel Midtvedt, Raimund Schluessler, Stephanie Mollmert, Hui-Shun Kuan, Simon Alberti, et al.

Frontiers in Physics 6 131 (2018) | Journal | PDF


Pili mediated intercellular forces shape heterogeneous bacterial microcolonies prior to multicellular differentiation

Wolfram Poenisch, Kelly B. Eckenrode, Khaled Alzurqa, Hadi Nasrollahi, Christoph Weber, Vasily Zaburdaev, Nicolas Biais

Scientific Reports 8 16567 (2018) | Journal | PDF


Exactly solvable dynamics of forced polymer loops

Wenwen Huang, Yen Ting Lin, Daniela Froemberg, Jaeoh Shin, Frank Juelicher, Vasily Zaburdaev

New Journal of Physics 20 113005 (2018) | Journal | PDF


Correction-free force calibration for magnetic tweezers experiments

Eugen Ostrofet, Flavia Stal Papini, David Dulin

Scientific Reports 8 15920 (2018) | Journal


Controlled generation of intrinsic near-infrared color centers in 4H-SiC via proton irradiation and annealing

M. Ruehl, C. Ott, Stephan Götzinger, M. Krieger, H.B. Weber

Applied Physics Letters 113 122102 (2018) | Journal


High-Speed Microscopy of Diffusion in Pore-Spanning Lipid Membranes

Susann Spindler, Jeremias Sibold, Reza Gholami Mahmoodabadi, Claudia Steinem, Vahid Sandoghdar

Nano Letters 18 5262-5271 (2018) | Journal


Genetic noise mechanism for power-law switching in bacterial flagellar motors

M. I. Krivonosov, Vasily Zaburdaev, S. V. Denisov, M. V. Ivanchenko

JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL 51(26) 265601 (2018) | Journal


Pausing controls branching between productive and non-productive pathways during initial transcription in bacteria

David Dulin, David L. V. Bauer, Anssi M. Malinen, Jacob J. W. Bakermans, Martin Kaller, Zakia Morichaud, Ivan Petushkov, Martin Depken, Konstantin Brodolin, et al.

Nature Communications 9 1478 (2018) | Journal


Manipulation of Quenching in Nanoantenna–Emitter Systems Enabled by External Detuned Cavities: A Path to Enhance Strong-Coupling

Burak Gürlek, Vahid Sandoghdar, Diego-Martin Cano

ACS Photonics 5 456-461 (2018) | Journal


Visualizing single-cell secretion dynamics with single protein sensitivity

Matthew Paul McDonald, André Gemeinhardt, Katharina König, Marek Piliarik, Stefanie Schaffer, Simon Völkl, Andreas Mackensen, Vahid Sandoghdar

Nano Letters 18 513-519 (2018) | Journal



2017

Kinetics of CrPV and HCV IRES-mediated eukaryotic translation using single-molecule fluorescence microscopy

Olivier Bugaud, Nathalie Barbier, Helene Chommy, Nicolas Fiszman, Antoine Le Gall, David Dulin, Matthieu Saguy, Nathalie Westbrook, Karen Perronet, et al.

RNA 23(11) 1626-1635 (2017) | Journal


Signatures of Nucleotide Analog Incorporation by an RNA-Dependent RNA Polymerase Revealed Using High-Throughput Magnetic Tweezers

David Dulin, Jamie J. Arnold, Theo van Laar, Hyung-Suk Oh, Cheri Lee, Angela L. Perkins, Daniel A. Harki, Martin Depken, Craig E. Cameron, et al.

Cell Reports 21(4) 1063-1076 (2017) | Journal


Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers

Franziska Kriegel, Niklas Ermann, Ruaridh Forbes, David Dulin, Nynke H. Dekker, Jan Lipfert

Nucleic Acids Research 45(10) 5920-5929 (2017) | Journal


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